STRINGSTRING
Bra005842 protein (Brassica rapa) - STRING interaction network
"Bra005842" - AT5G05140 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra005842AT5G05140 (E=7e-145) | transcription elongation factor-related (403 aa)    
Predicted Functional Partners:
Bra012206
AT3G25940 (E=3e-061) | transcription factor S-II (TFIIS) domain-containing protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
           
  0.512
Bra004045
AT1G68190 (E=5e-088) | zinc finger (B-box type) family protein (720 aa)
           
  0.497
Bra008255
AT1G76360 (E=4e-186) | protein kinase, putative (425 aa)
           
  0.483
Bra003724
AT1G76360 (E=1e-189) | protein kinase, putative (447 aa)
           
  0.483
Bra032625
AT4G07950 (E=2e-050) | DNA-directed RNA polymerase III family protein (168 aa)
           
  0.457
Bra024774.1-P
AT4G07950 (E=6e-051) | DNA-directed RNA polymerase III family protein (103 aa)
           
  0.457
Bra006662
AT1G01210 (E=1e-041) | DNA-directed RNA polymerase III family protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (103 aa)
           
  0.457
Bra019235
AT4G24200 (E=2e-249) | LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- TFIIS N-terminal (InterPro-IPR017923); BEST Arabidopsis thaliana protein match is- DNA binding / protein binding / transcription regulator (TAIR-AT3G48050.2); Has 1007 Blast hits to 471 proteins in 129 species- Archae - 0; Bacteria - 216; Metazoa - 191; Fungi - 150; Plants - 70; Viruses - 0; Other Eukaryotes - 380 (source- NCBI BLink). (824 aa)
           
  0.454
Bra019233
AT4G24200 (E=2e-248) | LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- TFIIS N-terminal (InterPro-IPR017923); BEST Arabidopsis thaliana protein match is- DNA binding / protein binding / transcription regulator (TAIR-AT3G48050.2); Has 1007 Blast hits to 471 proteins in 129 species- Archae - 0; Bacteria - 216; Metazoa - 191; Fungi - 150; Plants - 70; Viruses - 0; Other Eukaryotes - 380 (source- NCBI BLink). (802 aa)
           
  0.454
Bra025789
AT3G25940 (E=3e-057) | transcription factor S-II (TFIIS) domain-containing protein ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (119 aa)
           
  0.429
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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