STRINGSTRING
Bra005844 protein (Brassica rapa) - STRING interaction network
"Bra005844" - AT5G05150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005844AT5G05150 (E=1e-153) ATATG18E, ATG18E | AtATG18e (377 aa)    
Predicted Functional Partners:
Bra022393
AT3G19190 (E=0.0) ATATG2, ATG2 | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- ATG2, C-terminal (InterPro-IPR015412); Has 603 Blast hits to 514 proteins in 156 species- Archae - 0; Bacteria - 19; Metazoa - 326; Fungi - 168; Plants - 38; Viruses - 0; Other Eukaryotes - 52 (source- NCBI BLink). (1878 aa)
     
 
  0.927
Bra021714
AT2G31260 (E=0.0) APG9, ATAPG9 | APG9 (autophagy 9) (857 aa)
     
 
  0.914
Bra023609
AT5G17290 (E=2e-164) ATG5, APG5, ATATG5 | APG5 (AUTOPHAGY 5); transporter ; Required for autophagy (341 aa)
     
  0.792
Bra008564
AT5G17290 (E=2e-160) ATG5, APG5, ATATG5 | APG5 (AUTOPHAGY 5); transporter ; Required for autophagy (335 aa)
     
  0.792
Bra037974
AT1G54210 (E=4e-042) APG12, ATG12A | ATG12A (AUTOPHAGY 12 A); protein binding ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (85 aa)
       
  0.763
Bra027383
AT1G72600 (E=6e-008) | hydroxyproline-rich glycoprotein family protein (168 aa)
       
  0.763
Bra027382
AT1G54210 (E=7e-044) APG12, ATG12A | ATG12A (AUTOPHAGY 12 A); protein binding ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (89 aa)
       
  0.763
Bra003466
AT3G61710 (E=8e-133) ATATG6 | autophagy protein Apg6 family (748 aa)
     
  0.711
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
     
 
  0.648
Bra021545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1774 aa)
     
 
  0.648
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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