STRINGSTRING
Bra005846 protein (Brassica rapa) - STRING interaction network
"Bra005846" - AT5G05180 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra005846AT5G05180 (E=2e-089) | unknown protein (401 aa)    
Predicted Functional Partners:
Bra037036
AT4G32915 (E=1e-047) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (142 aa)
           
  0.583
Bra034541
AT4G32915 (E=5e-054) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (145 aa)
           
  0.583
Bra027574
AT5G44800 (E=0.0) CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (2222 aa)
           
  0.475
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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