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Bra005849 protein (Brassica rapa) - STRING interaction network
"Bra005849" - AT5G05210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005849AT5G05210 (E=3e-086) | nucleolar matrix protein-related (344 aa)    
Predicted Functional Partners:
Bra040830
AT3G22660 (E=6e-127) | rRNA processing protein-related (294 aa)
     
 
  0.997
Bra023812
AT3G22660 (E=3e-124) | rRNA processing protein-related (296 aa)
     
 
  0.997
Bra001877
AT3G22660 (E=5e-120) | rRNA processing protein-related (286 aa)
     
 
  0.997
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
 
  0.994
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
 
  0.994
Bra014494
AT3G60360 (E=8e-099) EDA14, UTP11 | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) ; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)
     
 
  0.990
Bra007528
AT3G60360 (E=1e-098) EDA14, UTP11 | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) ; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)
     
 
  0.990
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
      0.970
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
     
      0.970
Bra023878
AT1G23280 (E=4e-015) | MAK16 protein-related (96 aa)
     
      0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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