STRINGSTRING
Bra005853 protein (Brassica rapa) - STRING interaction network
"Bra005853" - AT5G05440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005853AT5G05440 (E=1e-107) | unknown protein (203 aa)    
Predicted Functional Partners:
Bra013334
AT4G18620 (E=6e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- Bet v I allergen family protein (TAIR-AT5G45870.1); Has 190 Blast hits to 190 proteins in 20 species- Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (166 aa)
       
 
0.897
Bra032357
AT1G30080 (E=1e-189) | glycosyl hydrolase family 17 protein (378 aa)
       
      0.613
Bra013297
AT4G18340 (E=3e-200) | glycosyl hydrolase family 17 protein (401 aa)
       
      0.613
Bra012604
AT4G18340 (E=8e-194) | glycosyl hydrolase family 17 protein (397 aa)
       
      0.613
Bra010800
AT1G30080 (E=5e-182) | glycosyl hydrolase family 17 protein (382 aa)
       
      0.613
Bra040822
AT2G20050 (E=0.0) | ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (966 aa)
       
  0.470
Bra040598
AT1G03590 (E=1e-111) | catalytic/ protein serine/threonine phosphatase (458 aa)
       
  0.470
Bra040530
AT3G05640 (E=2e-173) | protein phosphatase 2C, putative / PP2C, putative (348 aa)
       
  0.470
Bra040446
AT3G63340 (E=8e-213) | protein phosphatase 2C-related / PP2C-related (1059 aa)
       
  0.470
Bra040230
AT3G06270 (E=1e-083) | protein phosphatase 2C, putative / PP2C, putative (326 aa)
       
  0.470
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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