STRINGSTRING
Bra005862 protein (Brassica rapa) - STRING interaction network
"Bra005862" - AT5G05670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005862AT5G05670 (E=6e-127) | signal recognition particle binding (260 aa)    
Predicted Functional Partners:
Bra024060
AT4G30600 (E=2e-266) | signal recognition particle receptor alpha subunit family protein (614 aa)
   
  0.962
Bra014811
AT4G30600 (E=2e-212) | signal recognition particle receptor alpha subunit family protein (527 aa)
   
  0.962
Bra011203
AT4G30600 (E=1e-195) | signal recognition particle receptor alpha subunit family protein (622 aa)
   
  0.962
Bra039315
AT2G45770 (E=9e-057) CPFTSY, FRD4 | CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding (315 aa)
   
  0.928
Bra004937
AT2G45770 (E=3e-190) CPFTSY, FRD4 | CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding (368 aa)
   
  0.928
Bra036932
AT1G43860 (E=7e-181) | transcription factor (357 aa)
     
      0.629
Bra033552
AT4G38360 (E=4e-068) | unknown protein (540 aa)
     
      0.629
Bra032193
AT1G43860 (E=2e-182) | transcription factor (365 aa)
     
      0.629
Bra040191
AT3G04480 (E=0.0) | endoribonuclease (712 aa)
       
 
  0.629
Bra001106
AT3G04480 (E=0.0) | endoribonuclease (719 aa)
       
 
  0.629
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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