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Bra005872 protein (Brassica rapa) - STRING interaction network
"Bra005872" - AT5G05987 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005872AT5G05987 (E=5e-099) PRA1.A2 | PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) (209 aa)    
Predicted Functional Partners:
Bra025865
AT1G21000 (E=3e-137) | zinc-binding family protein (244 aa)
           
  0.518
Bra005862
AT5G05670 (E=6e-127) | signal recognition particle binding (260 aa)
           
  0.518
Bra036017
AT5G44265 (E=3e-016) | lipid binding (120 aa)
           
  0.503
Bra038817
AT2G18770 (E=7e-116) | signal recognition particle binding (323 aa)
           
  0.493
Bra016441
AT1G21000 (E=1e-136) | zinc-binding family protein (243 aa)
           
  0.493
Bra012263
AT1G21000 (E=3e-109) | zinc-binding family protein (199 aa)
           
  0.493
Bra028145
AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative (260 aa)
           
  0.472
Bra006789
AT5G58003 (E=3e-177) CPL4 | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (568 aa)
           
  0.414
Bra002681
AT5G58003 (E=3e-177) CPL4 | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase (525 aa)
           
  0.414
Bra009127
AT3G11240 (E=2e-203) ATE2 | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2); arginyltransferase ; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway (625 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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