STRINGSTRING
Bra005891 protein (Brassica rapa) - STRING interaction network
"Bra005891" - AT5G06320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005891AT5G06320 (E=4e-086) NHL3 | NHL3 (235 aa)    
Predicted Functional Partners:
Bra024717
AT1G26420 (E=6e-229) | FAD-binding domain-containing protein (527 aa)
     
   
  0.416
Bra013473
AT4G20800 (E=3e-233) | FAD-binding domain-containing protein (526 aa)
     
   
  0.401
Bra013472
AT4G20800 (E=2e-234) | FAD-binding domain-containing protein (527 aa)
     
   
  0.401
Bra013501
AT4G20860 (E=4e-233) | FAD-binding domain-containing protein (532 aa)
     
   
  0.400
Bra013478
AT4G20860 (E=2e-241) | FAD-binding domain-containing protein (522 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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