STRINGSTRING
Bra005894 protein (Brassica rapa) - STRING interaction network
"Bra005894" - AT5G06390 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005894AT5G06390 (E=2e-187) FLA17 | FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR) (443 aa)    
Predicted Functional Partners:
Bra028566
AT5G10790 (E=7e-222) UBP22 | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (504 aa)
       
      0.619
SUS1
AT3G27100 (E=9e-025) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Transcription factor, enhancer of yellow 2 (InterPro-IPR018783); Has 197 Blast hits to 197 proteins in 62 species- Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 8; Plants - 24; Viruses - 0; Other Eukaryotes - 13 (source- NCBI BLink). ; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexe [...] (163 aa)
       
      0.614
Bra025249
AT3G27100 (E=1e-038) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Transcription factor, enhancer of yellow 2 (InterPro-IPR018783); Has 157 Blast hits to 157 proteins in 56 species- Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (115 aa)
       
      0.614
Bra023479
AT5G14620 (E=7e-060) DRM2, DMT7 | DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (333 aa)
       
      0.614
Bra008749
AT5G14620 (E=3e-231) DRM2, DMT7 | DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase (601 aa)
       
      0.614
Bra021811
AT2G32740 (E=5e-217) | exostosin family protein (809 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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