STRINGSTRING
Bra005897 protein (Brassica rapa) - STRING interaction network
"Bra005897" - AT5G06450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005897AT5G06450 (E=3e-083) | nucleic acid binding (199 aa)    
Predicted Functional Partners:
Bra029402
AT5G24340 (E=2e-162) | 3’-5’ exonuclease domain-containing protein (469 aa)
           
  0.666
Bra027281
AT3G15080 (E=8e-112) | exonuclease family protein (273 aa)
           
  0.666
Bra032748
AT4G13870 (E=2e-114) WRNEXO | WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3’-5’ exonuclease/ nucleic acid binding / protein binding (277 aa)
           
  0.543
Bra029404
AT5G24340 (E=4e-055) | 3’-5’ exonuclease domain-containing protein (129 aa)
           
  0.491
Bra027942
AT1G56310 (E=3e-189) | 3’-5’ exonuclease domain-containing protein (572 aa)
           
  0.491
Bra031741
AT1G10930 (E=0.0) ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (1162 aa)
           
  0.406
Bra018418
AT1G10930 (E=0.0) ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (1196 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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