STRINGSTRING
Bra005902 protein (Brassica rapa) - STRING interaction network
"Bra005902" - AT3G13445 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005902AT3G13445 (E=4e-086) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding (208 aa)    
Predicted Functional Partners:
Bra035499
AT1G32750 (E=0.0) HAF01, HAF1, HAC13, GTD1, TAF1 | HAF01; DNA binding / histone acetyltransferase (1893 aa)
     
  0.997
Bra032544
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding (1643 aa)
       
  0.996
Bra036214
AT3G29380 (E=7e-111) | transcription factor IIB (TFIIB) family protein (327 aa)
     
  0.978
Bra033101
AT3G29380 (E=3e-092) | transcription factor IIB (TFIIB) family protein (329 aa)
     
  0.978
Bra025398
AT3G29380 (E=8e-109) | transcription factor IIB (TFIIB) family protein (336 aa)
     
  0.978
Bra017978
AT3G29380 (E=4e-109) | transcription factor IIB (TFIIB) family protein (337 aa)
     
  0.978
Bra017769
AT4G36650 (E=4e-219) ATPBRP | ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN); RNA polymerase II transcription factor/ rDNA binding (502 aa)
     
  0.978
Bra014630
AT3G57370 (E=5e-043) | transcription factor IIB (TFIIB) family protein (252 aa)
     
  0.978
Bra004630
AT2G41630 (E=6e-095) TFIIB | TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor/ protein binding / transcription regulator/ translation initiation factor/ zinc ion binding (304 aa)
     
  0.978
Bra001354
AT3G10330 (E=1e-169) | transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) (312 aa)
     
  0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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