STRINGSTRING
Bra005906 protein (Brassica rapa) - STRING interaction network
"Bra005906" - AT5G06700 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005906AT5G06700 (E=1e-217) | unknown protein (601 aa)    
Predicted Functional Partners:
Bra038609
AT5G63135 (E=2e-025) | unknown protein (101 aa)
           
  0.473
Bra029587
AT3G06550 (E=1e-288) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Cas1p-like (InterPro-IPR012419); BEST Arabidopsis thaliana protein match is- O-acetyltransferase family protein (TAIR-AT2G34410.2); Has 185 Blast hits to 183 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (554 aa)
           
  0.473
Bra000643
AT4G08230 (E=4e-038) | glycine-rich protein (112 aa)
           
  0.473
Bra023421
AT5G13570 (E=1e-142) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (325 aa)
           
  0.416
Bra008818
AT5G13570 (E=1e-147) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (316 aa)
           
  0.416
Bra028087
ATCG00490 (E=4e-277) RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. (479 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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