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Bra005919 protein (Brassica rapa) - STRING interaction network
"Bra005919" - AT5G06870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005919AT5G06870 (E=3e-121) PGIP2, ATPGIP2 | PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2); protein binding (331 aa)    
Predicted Functional Partners:
Bra031727
AT1G11130 (E=1e-087) SUB, SCM, SRF9 | SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase (347 aa)
   
          0.506
Bra037450
AT5G48940 (E=8e-026) | leucine-rich repeat transmembrane protein kinase, putative (116 aa)
   
          0.503
Bra018384
AT2G29500 (E=3e-053) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (159 aa)
           
  0.479
Bra018384.1-P
AT2G29500 (E=3e-053) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (159 aa)
           
  0.479
Bra018383
AT2G29500 (E=1e-063) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (156 aa)
           
  0.479
Bra011617
AT4G35470 (E=6e-178) | leucine-rich repeat family protein (457 aa)
   
          0.475
Bra017712
AT4G35470 (E=2e-237) | leucine-rich repeat family protein (545 aa)
   
          0.473
Bra032935
AT3G26500 (E=2e-189) | leucine-rich repeat family protein (446 aa)
   
          0.468
Bra034849
AT3G11330 (E=8e-181) | leucine-rich repeat family protein (497 aa)
   
          0.465
Bra024514
AT2G17440 (E=5e-157) | leucine-rich repeat family protein (500 aa)
   
          0.464
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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