STRINGSTRING
Bra005920 protein (Brassica rapa) - STRING interaction network
"Bra005920" - AT5G06920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005920AT5G06920 (E=8e-137) FLA21 | FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR) (352 aa)    
Predicted Functional Partners:
Bra034817
AT3G11700 (E=6e-207) FLA18 | FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR) (456 aa)
           
  0.482
Bra010241
AT4G31370 (E=7e-082) FLA5 | FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR) (277 aa)
           
  0.475
Bra017285
AT2G35860 (E=1e-202) FLA16 | FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR) (443 aa)
           
  0.473
Bra032998
AT1G33390 (E=0.0) | helicase domain-containing protein (1237 aa)
           
  0.418
Bra007569
AT3G60900 (E=1e-155) FLA10 | FLA10 (423 aa)
           
  0.418
Bra038741
AT3G12660 (E=9e-049) FLA14 | FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) (264 aa)
           
  0.416
Bra034746
AT3G12660 (E=3e-046) FLA14 | FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) (270 aa)
           
  0.416
Bra001464
AT3G12660 (E=3e-056) FLA14 | FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) (263 aa)
           
  0.416
Bra000566
AT2G24450 (E=8e-112) FLA3 | FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) (280 aa)
           
  0.412
Bra033439
AT3G52370 (E=2e-178) FLA15 | FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR) (436 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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