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Bra005923 protein (Brassica rapa) - STRING interaction network
"Bra005923" - AT2G17360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005923AT2G17360 (E=3e-133) | 40S ribosomal protein S4 (RPS4A) (279 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra018026
AT5G23740 (E=8e-067) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (280 aa)
   
  0.999
Bra034985
AT3G44010 (E=5e-026) | 40S ribosomal protein S29 (RPS29B) (66 aa)
   
  0.999
Bra034590
AT3G44010 (E=5e-027) | 40S ribosomal protein S29 (RPS29B) (58 aa)
   
  0.999
Bra011477
AT3G44010 (E=3e-028) | 40S ribosomal protein S29 (RPS29B) (56 aa)
   
  0.999
Bra029928
AT5G23740 (E=1e-075) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra029381
AT5G23740 (E=2e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra026484
AT5G23740 (E=7e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra009706
AT5G23740 (E=2e-077) RPS11-BETA | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA); structural constituent of ribosome (159 aa)
   
  0.999
Bra035439
AT1G58380 (E=7e-124) XW6 | XW6; structural constituent of ribosome (280 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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