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Bra005933 protein (Brassica rapa) - STRING interaction network
"Bra005933" - AT5G07350 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005933AT5G07350 (E=0.0) | tudor domain-containing protein / nuclease family protein (991 aa)    
Predicted Functional Partners:
Bra034604
AT5G11760 (E=6e-012) | unknown protein (159 aa)
           
  0.573
Bra029605
AT3G06780 (E=2e-040) | glycine-rich protein (194 aa)
           
  0.573
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
         
  0.560
Bra033381
AT1G03270 (E=1e-206) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF21 (InterPro-IPR002550), Cystathionine beta-synthase, core (InterPro-IPR000644); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G14240.1); Has 6515 Blast hits to 6357 proteins in 1347 species- Archae - 64; Bacteria - 4189; Metazoa - 291; Fungi - 188; Plants - 123; Viruses - 0; Other Eukaryotes - 1660 [...] (957 aa)
       
    0.557
Bra033156
AT4G20330 (E=9e-098) | transcription initiation factor-related (284 aa)
       
    0.557
Bra013384
AT4G20330 (E=5e-112) | transcription initiation factor-related (294 aa)
       
    0.557
Bra013383
AT4G20340 (E=2e-116) | RNA polymerase II transcription factor/ transcription initiation factor (454 aa)
       
    0.557
Bra034125
AT3G10540 (E=2e-256) | 3-phosphoinositide-dependent protein kinase, putative (489 aa)
       
      0.556
Bra029850
AT3G10540 (E=4e-251) | 3-phosphoinositide-dependent protein kinase, putative (481 aa)
       
      0.556
Bra009447
AT5G04510 (E=1e-247) PDK1, ATPDK1 | PDK1 (3’-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase (490 aa)
       
      0.556
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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