STRINGSTRING
Bra005951 protein (Brassica rapa) - STRING interaction network
"Bra005951" - AT5G07730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005951AT5G07730 (E=5e-038) | unknown protein (245 aa)    
Predicted Functional Partners:
Bra036137
AT3G04320 (E=1e-053) | endopeptidase inhibitor (336 aa)
       
      0.904
Bra010030
AT5G49540 (E=2e-036) | unknown protein (116 aa)
       
      0.904
Bra021462
AT3G02420 (E=4e-167) | unknown protein (343 aa)
       
      0.899
Bra031203
AT2G21600 (E=2e-077) ATRER1B | ATRER1B (191 aa)
       
      0.870
Bra030290
AT2G21600 (E=2e-089) ATRER1B | ATRER1B (200 aa)
       
      0.870
Bra010695
AT4G39220 (E=1e-091) ATRER1A | ATRER1A (191 aa)
       
      0.870
Bra039625
AT2G18240 (E=1e-066) | RER1 protein, putative (209 aa)
       
      0.736
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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