STRINGSTRING
Bra005957 protein (Brassica rapa) - STRING interaction network
"Bra005957" - AT5G07870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005957AT5G07870 (E=2e-079) | transferase family protein (190 aa)    
Predicted Functional Partners:
Bra036989
AT4G33670 (E=2e-157) | L-galactose dehydrogenase (L-GalDH) (323 aa)
       
      0.612
Bra034580
AT4G33680 (E=1e-233) AGD2 | AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase (756 aa)
       
      0.612
Bra009582
AT1G79730 (E=7e-208) ELF7 | ELF7 (EARLY FLOWERING 7) (576 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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