STRINGSTRING
Bra005963 protein (Brassica rapa) - STRING interaction network
"Bra005963" - AT5G08040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005963AT5G08040 (E=1e-018) TOM5 | TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG) (54 aa)    
Predicted Functional Partners:
Bra014187
AT1G49410 (E=2e-021) TOM6 | TOM6 (translocase of the outer mitochondrial membrane 6) (54 aa)
     
   
  0.633
Bra033708
AT5G43970 (E=3e-032) TOM22-V, TOM9-2, ATTOM22-V | TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-driven protein transmembrane transporter (97 aa)
     
   
  0.586
Bra027011
AT3G46560 (E=4e-047) TIM9, emb2474 | TIM9; P-P-bond-hydrolysis-driven protein transmembrane transporter (93 aa)
     
   
  0.503
Bra015286
AT1G04070 (E=9e-031) TOM22-I, ATTOM22-I | TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I); P-P-bond-hydrolysis-driven protein transmembrane transporter (96 aa)
     
   
  0.496
Bra027518
AT5G43970 (E=2e-037) TOM22-V, TOM9-2, ATTOM22-V | TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-driven protein transmembrane transporter (99 aa)
     
   
  0.484
Bra039260
AT3G46560 (E=4e-044) TIM9, emb2474 | TIM9; P-P-bond-hydrolysis-driven protein transmembrane transporter (93 aa)
     
   
  0.474
Bra037095
AT1G55900 (E=2e-122) TIM50, emb1860 | TIM50 (355 aa)
           
  0.471
Bra030827
AT1G55900 (E=2e-145) TIM50, emb1860 | TIM50 (372 aa)
           
  0.471
Bra022760
AT5G50810 (E=6e-029) TIM8 | TIM8; P-P-bond-hydrolysis-driven protein transmembrane transporter (76 aa)
     
   
  0.469
Bra038249
AT3G20000 (E=5e-152) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel (310 aa)
           
  0.420
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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