STRINGSTRING
Bra005964 protein (Brassica rapa) - STRING interaction network
"Bra005964" - AT5G08050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005964AT5G08050 (E=1e-042) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF1118 (InterPro-IPR009500), Uncharacterised conserved protein UCP022207 (InterPro-IPR016801); Has 41 Blast hits to 41 proteins in 10 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (157 aa)    
Predicted Functional Partners:
Bra039277
AT2G46540 (E=1e-027) | unknown protein (65 aa)
           
  0.545
Bra025407
AT3G29970 (E=2e-043) | germination protein-related (87 aa)
           
  0.545
Bra033861
AT1G32060 (E=2e-196) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (395 aa)
     
        0.519
Bra023235
AT1G32060 (E=3e-210) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (397 aa)
     
        0.519
Bra004528
AT2G46540 (E=1e-024) | unknown protein (57 aa)
           
  0.514
Bra031471
AT1G60950 (E=3e-057) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (148 aa)
     
        0.505
Bra027109
AT1G60950 (E=1e-055) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (148 aa)
     
        0.505
Bra037761
AT5G64040 (E=1e-070) PSAN | PSAN; calmodulin binding (168 aa)
     
        0.499
Bra031937
AT5G64040 (E=7e-067) PSAN | PSAN; calmodulin binding (164 aa)
     
        0.499
Bra024261
AT5G64040 (E=6e-064) PSAN | PSAN; calmodulin binding (170 aa)
     
        0.499
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]