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Bra005968 protein (Brassica rapa) - STRING interaction network
"Bra005968" - AT5G08080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005968AT5G08080 (E=2e-128) SYP132, ATSYP132 | SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptor (304 aa)    
Predicted Functional Partners:
Bra032989
AT5G61210 (E=2e-091) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (383 aa)
     
  0.974
Bra029328
AT5G61210 (E=1e-129) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (294 aa)
     
  0.974
Bra026875
AT1G13890 (E=9e-067) SNAP30, ATSNAP30 | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30); SNAP receptor (164 aa)
     
  0.974
Bra013246
AT5G61210 (E=2e-082) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (304 aa)
     
  0.974
Bra012978
AT5G61210 (E=2e-138) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (305 aa)
     
  0.974
Bra005958
AT5G61210 (E=5e-102) SNAP33, ATSNAP33, SNP33, ATSNAP33B | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (292 aa)
     
  0.974
Bra038812
AT4G12120 (E=1e-041) SEC1B, ATSEC1B | SEC1B; protein transporter (128 aa)
       
  0.964
Bra032660
AT1G02010 (E=0.0) | SEC1A (SIMILAR TO ELECTRON CAREER 1A); protein transporter (596 aa)
       
  0.964
Bra029438
AT4G12120 (E=0.0) SEC1B, ATSEC1B | SEC1B; protein transporter (659 aa)
       
  0.964
Bra026974
AT1G12360 (E=0.0) KEU | KEU (keule); protein transporter (666 aa)
       
  0.964
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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