STRINGSTRING
Bra005969 protein (Brassica rapa) - STRING interaction network
"Bra005969" - AT5G08130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005969AT5G08130 (E=1e-186) BIM1 | BIM1; DNA binding / protein binding / transcription factor (553 aa)    
Predicted Functional Partners:
Bra031077
AT1G19350 (E=8e-117) BES1, BZR2 | BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (386 aa)
       
 
  0.498
Bra025733
AT1G19350 (E=5e-114) BES1, BZR2 | BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (331 aa)
       
 
  0.498
Bra017782
AT4G36780 (E=6e-066) | transcription regulator (313 aa)
       
 
  0.498
Bra016508
AT1G19350 (E=4e-120) BES1, BZR2 | BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator (333 aa)
       
 
  0.498
Bra011706
AT4G36780 (E=3e-069) | transcription regulator (303 aa)
       
 
  0.498
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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