STRINGSTRING
Bra005973 protein (Brassica rapa) - STRING interaction network
"Bra005973" - AT5G08160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005973AT5G08160 (E=1e-193) ATPK3 | ATPK3; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (345 aa)    
Predicted Functional Partners:
Bra011117
AT4G29490 (E=2e-263) | aminopeptidase/ manganese ion binding (493 aa)
       
      0.909
Bra037964
AT1G54100 (E=3e-066) ALDH7B4 | ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (230 aa)
       
      0.617
Bra032872
AT5G44050 (E=5e-017) | MATE efflux family protein (108 aa)
       
      0.617
Bra030906
AT1G54100 (E=4e-265) ALDH7B4 | ALDH7B4 (Aldehyde Dehydrogenase 7B4); 3-chloroallyl aldehyde dehydrogenase/ oxidoreductase (504 aa)
       
      0.617
Bra039444
AT3G05350 (E=0.0) | aminopeptidase/ hydrolase (696 aa)
       
      0.613
Bra030767
AT1G09300 (E=1e-251) | metallopeptidase M24 family protein (478 aa)
       
      0.613
Bra011704
AT4G36760 (E=2e-250) ATAPP1, APP1 | ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (620 aa)
       
      0.613
Bra010574
AT4G36760 (E=0.0) ATAPP1, APP1 | ATAPP1; N-1-naphthylphthalamic acid binding / aminopeptidase (640 aa)
       
      0.613
Bra031917
AT5G64440 (E=7e-285) AtFAAH | AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase); N-(long-chain-acyl)ethanolamine deacylase/ amidase (613 aa)
       
      0.604
Bra031652
AT1G08980 (E=3e-182) ATAMI1, AMI1, ATTOC64-I | AMI1 (AMIDASE 1); amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds / indoleacetamide hydrolase (421 aa)
       
      0.604
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]