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Bra005974 protein (Brassica rapa) - STRING interaction network
"Bra005974" - AT5G08170 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005974AT5G08170 (E=9e-208) EMB1873, ATAIH | EMB1873 (EMBRYO DEFECTIVE 1873); agmatine deiminase (385 aa)    
Predicted Functional Partners:
Bra034353
AT2G27450 (E=5e-166) NLP1, ATNLP1, CPA | NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds (297 aa)
   
  0.992
Bra017672
AT4G34710 (E=0.0) ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (688 aa)
       
  0.970
Bra012018
AT2G27450 (E=6e-025) NLP1, ATNLP1, CPA | NLP1 (NITRILASE-LIKE PROTEIN 1); N-carbamoylputrescine amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds (78 aa)
 
   
  0.905
Bra008919
AT5G12040 (E=8e-147) | carbon-nitrogen hydrolase family protein (430 aa)
       
  0.834
Bra006138
AT5G12040 (E=1e-168) | carbon-nitrogen hydrolase family protein (364 aa)
       
  0.834
Bra034648
AT4G34710 (E=1e-239) ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (665 aa)
       
  0.823
Bra011555
AT4G34710 (E=2e-295) ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (670 aa)
       
  0.823
Bra011554
AT4G34710 (E=3e-290) ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (648 aa)
       
  0.823
Bra024290
AT5G64370 (E=5e-222) BETA-UP | BETA-UP (beta-ureidopropionase); beta-ureidopropionase (408 aa)
 
   
  0.762
Bra037776
AT5G64370 (E=9e-220) BETA-UP | BETA-UP (beta-ureidopropionase); beta-ureidopropionase (408 aa)
 
   
  0.761
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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