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Bra005980 protein (Brassica rapa) - STRING interaction network
"Bra005980" - AT5G08280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005980AT5G08280 (E=1e-188) HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase (379 aa)    
Predicted Functional Partners:
Bra016270
AT1G69740 (E=4e-199) HEMB1 | HEMB1; catalytic/ metal ion binding / porphobilinogen synthase (426 aa)
 
  0.990
Bra036945
AT1G44318 (E=3e-119) hemb2 | hemb2; catalytic/ metal ion binding / porphobilinogen synthase (374 aa)
 
  0.956
Bra017892
AT1G69740 (E=1e-033) HEMB1 | HEMB1; catalytic/ metal ion binding / porphobilinogen synthase (74 aa)
 
  0.955
Bra007749
AT2G26540 (E=2e-105) HEMD | HEMD; uroporphyrinogen-III synthase (294 aa)
     
 
  0.944
Bra016989
AT2G40490 (E=5e-203) HEME2 | HEME2; uroporphyrinogen decarboxylase (390 aa)
 
  0.922
Bra004574
AT2G40490 (E=5e-132) HEME2 | HEME2; uroporphyrinogen decarboxylase (263 aa)
 
  0.909
Bra020808
AT3G14930 (E=4e-028) HEME1 | HEME1; uroporphyrinogen decarboxylase (254 aa)
   
  0.882
Bra001574
AT3G14930 (E=9e-049) HEME1 | HEME1; uroporphyrinogen decarboxylase (108 aa)
   
  0.882
Bra038646
AT5G63570 (E=3e-244) GSA1 | GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE); glutamate-1-semialdehyde 2,1-aminomutase (473 aa)
 
   
  0.827
Bra035836
AT5G63570 (E=1e-244) GSA1 | GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE); glutamate-1-semialdehyde 2,1-aminomutase (473 aa)
 
   
  0.827
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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