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Bra005982 protein (Brassica rapa) - STRING interaction network
"Bra005982" - AT5G08300 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005982AT5G08300 (E=1e-186) | succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative (343 aa)    
Predicted Functional Partners:
Bra036470
AT2G20420 (E=2e-227) | succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative (421 aa)
 
  0.999
Bra027661
AT2G20420 (E=3e-228) | succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative (421 aa)
 
  0.999
Bra018425
AT1G10670 (E=3e-221) ACLA-1 | ACLA-1; ATP citrate synthase (423 aa)
 
  0.999
Bra030777
AT1G09430 (E=6e-237) ACLA-3 | ACLA-3; ATP citrate synthase (424 aa)
   
  0.998
Bra027127
AT1G60810 (E=3e-222) ACLA-2 | ACLA-2; ATP citrate synthase (423 aa)
   
  0.998
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
 
  0.990
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
 
  0.990
Bra024466
AT2G18450 (E=0.0) SDH1-2 | SDH1-2; succinate dehydrogenase ; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (632 aa)
   
  0.981
Bra012100
AT5G66760 (E=0.0) SDH1-1 | SDH1-1; ATP binding / succinate dehydrogenase ; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (624 aa)
   
  0.981
Bra028992
AT5G55070 (E=5e-210) | 2-oxoacid dehydrogenase family protein (494 aa)
   
 
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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