STRINGSTRING
Bra005986 protein (Brassica rapa) - STRING interaction network
"Bra005986" - AT5G08340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005986AT5G08340 (E=5e-169) | riboflavin biosynthesis protein-related (367 aa)    
Predicted Functional Partners:
Bra028835
AT5G03430 (E=1e-250) | phosphoadenosine phosphosulfate (PAPS) reductase family protein (503 aa)
   
 
  0.932
Bra009529
AT5G03430 (E=6e-256) | phosphoadenosine phosphosulfate (PAPS) reductase family protein (499 aa)
   
 
  0.932
Bra005764
AT5G03430 (E=6e-238) | phosphoadenosine phosphosulfate (PAPS) reductase family protein (522 aa)
   
 
  0.932
Bra038522
AT2G22450 (E=7e-237) | riboflavin biosynthesis protein, putative (481 aa)
       
  0.836
Bra037772
AT5G64300 (E=6e-230) ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (518 aa)
       
  0.836
Bra024283
AT5G64300 (E=2e-238) ATGCH, GCH, ATRIBA1, RFD1 | ATGCH; 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II (530 aa)
       
  0.836
Bra020293
AT5G59750 (E=3e-246) | riboflavin biosynthesis protein, putative (499 aa)
       
  0.836
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
         
  0.718
Bra018153
AT3G47390 (E=5e-292) | cytidine/deoxycytidylate deaminase family protein (587 aa)
   
   
  0.655
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
         
  0.652
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]