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Bra005988 protein (Brassica rapa) - STRING interaction network
"Bra005988" - AT5G08370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005988AT5G08370 (E=7e-077) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (548 aa)    
Predicted Functional Partners:
Bra037183
AT5G13980 (E=0.0) | glycosyl hydrolase family 38 protein (1151 aa)
       
 
  0.746
Bra025225
AT3G26720 (E=0.0) | glycosyl hydrolase family 38 protein (1021 aa)
       
 
  0.746
Bra006227
AT5G13980 (E=0.0) | glycosyl hydrolase family 38 protein (1020 aa)
       
 
  0.746
Bra014765
AT3G55260 (E=8e-291) HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (550 aa)
   
 
  0.633
Bra004121
AT1G65590 (E=6e-265) HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase (534 aa)
   
 
  0.629
Bra017755
AT1G56360 (E=5e-190) PAP6, ATPAP6 | PAP6 (PURPLE ACID PHOSPHATASE 6); acid phosphatase/ protein serine/threonine phosphatase (555 aa)
     
 
  0.569
Bra036334
AT1G45130 (E=0.0) BGAL5 | BGAL5 (beta-galactosidase 5); beta-galactosidase/ catalytic/ cation binding (730 aa)
         
  0.564
Bra035634
AT5G56870 (E=0.0) BGAL4 | BGAL4 (beta-galactosidase 4); beta-galactosidase (722 aa)
         
  0.564
Bra033748
AT3G53080 (E=2e-040) | galactose-binding lectin family protein (154 aa)
         
  0.564
Bra033571
AT4G38590 (E=0.0) BGAL14 | glycosyl hydrolase family 35 protein (956 aa)
         
  0.564
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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