STRINGSTRING
Bra005990 protein (Brassica rapa) - STRING interaction network
"Bra005990" - AT5G08390 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005990AT5G08390 (E=2e-222) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- CUL4 RING ubiquitin ligase complex; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- transducin family protein / WD-40 repeat family protein (TAIR-AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species- Archa [...] (848 aa)    
Predicted Functional Partners:
Bra008479
AT1G80350 (E=1e-247) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding ; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (528 aa)
     
 
  0.950
Bra003561
AT1G80350 (E=9e-239) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding ; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (531 aa)
     
 
  0.950
Bra022979
AT2G34560 (E=6e-182) | katanin, putative (577 aa)
     
 
  0.950
Bra005414
AT2G34560 (E=2e-201) | katanin, putative (392 aa)
     
 
  0.949
Bra034204
AT4G03390 (E=3e-188) SRF3 | SRF3 (STRUBBELIG-RECEPTOR FAMILY 3); ATP binding / kinase/ protein serine/threonine kinase (767 aa)
           
  0.531
Bra031449
AT1G11120 (E=3e-044) | unknown protein (148 aa)
           
  0.531
Bra031444
AT1G61215 (E=6e-167) BRD4 | BRD4 (BROMODOMAIN 4); DNA binding (470 aa)
           
  0.531
Bra019880
AT1G11120 (E=1e-043) | unknown protein (190 aa)
           
  0.531
Bra000827
AT2G20850 (E=2e-203) SRF1 | SRF1 (strubbelig receptor family 1); kinase (762 aa)
           
  0.531
Bra025240
AT3G26990 (E=3e-201) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF618 (InterPro-IPR006903), Regulation of nuclear pre-mRNA protein (InterPro-IPR006569), ENTH/VHS (InterPro-IPR008942); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species- Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruse [...] (505 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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