STRINGSTRING
Bra005991 protein (Brassica rapa) - STRING interaction network
"Bra005991" - AT5G08400 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005991AT5G08400 (E=1e-138) | unknown protein (331 aa)    
Predicted Functional Partners:
Bra014755
AT3G55330 (E=5e-101) PPL1 | PPL1 (PsbP-like protein 1); calcium ion binding (229 aa)
   
        0.545
Bra008678
AT5G15760 (E=6e-074) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (179 aa)
   
        0.534
Bra004323
AT1G68590 (E=1e-067) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (168 aa)
   
        0.534
Bra004027
AT1G68590 (E=3e-066) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (160 aa)
   
        0.534
Bra038364
AT1G68590 (E=1e-038) | plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative (147 aa)
   
          0.523
Bra007446
AT3G59400 (E=3e-085) GUN4 | GUN4; enzyme binding / tetrapyrrole binding (256 aa)
   
          0.522
Bra003375
AT3G59400 (E=8e-082) GUN4 | GUN4; enzyme binding / tetrapyrrole binding (259 aa)
   
          0.522
Bra006777
AT5G58260 (E=3e-103) | Encodes subunit NDH-N of NAD(P)H-plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. (208 aa)
   
          0.521
Bra031496
AT1G60600 (E=9e-155) ABC4 | ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase (376 aa)
   
        0.519
Bra010621
AT4G37925 (E=9e-107) NDH-M | NDH-M (subunit NDH-M of NAD(P)H-plastoquinone dehydrogenase complex) (220 aa)
   
          0.519
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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