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Bra005992 protein (Brassica rapa) - STRING interaction network
"Bra005992" - AT5G08415 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005992AT5G08415 (E=6e-187) | lipoic acid synthase family protein (557 aa)    
Predicted Functional Partners:
Bra011244
AT4G31050 (E=3e-132) | lipoyltransferase (LIP2p) (454 aa)
 
 
  0.980
Bra010258
AT4G31050 (E=2e-126) | lipoyltransferase (LIP2p) (784 aa)
 
 
  0.980
Bra015337
AT1G04640 (E=6e-121) LIP2 | LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase (378 aa)
 
 
  0.980
Bra025025
AT5G46290 (E=8e-254) KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (470 aa)
     
  0.947
Bra022029
AT5G46290 (E=3e-244) KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (472 aa)
     
  0.947
Bra017565
AT5G46290 (E=8e-247) KAS I | KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I); catalytic/ fatty-acid synthase/ transferase, transferring acyl groups other than amino-acyl groups (470 aa)
     
  0.947
Bra015879
AT1G74960 (E=2e-248) FAB1, KAS2 | FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (542 aa)
     
  0.946
Bra013202
AT2G04540 (E=2e-230) | 3-oxoacyl-(acyl-carrier-protein) synthase II, putative (462 aa)
     
  0.946
Bra003777
AT1G74960 (E=8e-254) FAB1, KAS2 | FAB1 (FATTY ACID BIOSYNTHESIS 1); 3-oxoacyl-[acyl-carrier-protein] synthase/ fatty-acid synthase (546 aa)
     
  0.946
Bra013160
AT2G05990 (E=8e-164) MOD1, ENR1 | MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ enoyl-[acyl-carrier-protein] reductase/ oxidoreductase (385 aa)
   
 
  0.910
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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