STRINGSTRING
Bra005994 protein (Brassica rapa) - STRING interaction network
"Bra005994" - AT5G08450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005994AT5G08450 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Histone deacetylation protein Rxt3 (InterPro-IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species- Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source- NCBI BLink). (862 aa)    
Predicted Functional Partners:
Bra040510
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2) (1345 aa)
       
 
  0.755
Bra037066
AT1G10450 (E=1e-065) SNL6 | SNL6 (SIN3-LIKE 6) (278 aa)
       
 
  0.755
Bra037065
AT1G10450 (E=6e-049) SNL6 | SNL6 (SIN3-LIKE 6) (241 aa)
       
 
  0.755
Bra035418
AT1G59890 (E=0.0) SNL5 | SNL5 (SIN3-LIKE 5) (1107 aa)
       
 
  0.755
Bra030938
AT3G01320 (E=1e-015) SNL1 | SNL1 (SIN3-LIKE 1) (110 aa)
       
 
  0.755
Bra028394
AT1G70060 (E=1e-019) SNL4 | SNL4 (SIN3-LIKE 4) (107 aa)
       
 
  0.755
Bra028354
AT3G24260 (E=4e-032) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- Histone deacetylase interacting (InterPro-IPR013194); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G28870.1); Has 139 Blast hits to 137 proteins in 48 species- Archae - 5; Bacteria - 3; Metazoa - 37; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 42 (source- NCBI BLink). (294 aa)
       
 
  0.755
Bra028349
AT3G24260 (E=2e-036) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- Histone deacetylase interacting (InterPro-IPR013194); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G28870.1); Has 139 Blast hits to 137 proteins in 48 species- Archae - 5; Bacteria - 3; Metazoa - 37; Fungi - 2; Plants - 50; Viruses - 0; Other Eukaryotes - 42 (source- NCBI BLink). (397 aa)
       
 
  0.755
Bra027831
AT1G59890 (E=4e-073) SNL5 | SNL5 (SIN3-LIKE 5) (746 aa)
       
 
  0.755
Bra025531
AT1G59890 (E=2e-014) SNL5 | SNL5 (SIN3-LIKE 5) (127 aa)
       
 
  0.755
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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