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Bra006003 protein (Brassica rapa) - STRING interaction network
"Bra006003" - AT5G08550 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006003AT5G08550 (E=4e-158) ILP1 | ILP1 (increased level of polyploidy1-1D); translation repressor (661 aa)    
Predicted Functional Partners:
Bra033025
AT3G27730 (E=0.0) RCK, MER3 | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase (1094 aa)
       
    0.937
Bra029333
AT5G61140 (E=0.0) | DEAD box RNA helicase, putative (2133 aa)
       
    0.937
Bra029460
AT1G80070 (E=2e-013) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (87 aa)
       
    0.935
Bra021701
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2338 aa)
       
    0.935
Bra013431
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2369 aa)
       
    0.935
Bra005076
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2289 aa)
       
    0.935
Bra005075
AT1G80070 (E=8e-114) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (267 aa)
       
    0.935
Bra003548
AT1G80070 (E=1e-012) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (53 aa)
       
    0.935
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
 
    0.922
Bra035413
AT1G59990 (E=1e-261) | DEAD/DEAH box helicase, putative (RH22) (572 aa)
     
    0.755
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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