STRINGSTRING
Bra006004 protein (Brassica rapa) - STRING interaction network
"Bra006004" - AT5G08560 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra006004AT5G08560 (E=2e-199) | transducin family protein / WD-40 repeat family protein (371 aa)    
Predicted Functional Partners:
Bra011793
AT4G37880 (E=1e-179) | protein binding / zinc ion binding (381 aa)
     
 
  0.953
Bra010618
AT4G37880 (E=5e-172) | protein binding / zinc ion binding (385 aa)
     
 
  0.953
Bra006028
AT5G09630 (E=5e-090) | protein binding / zinc ion binding (381 aa)
     
 
  0.953
Bra034420
AT1G35470 (E=9e-208) | SPla/RYanodine receptor (SPRY) domain-containing protein (459 aa)
     
 
  0.951
Bra028085
AT1G35470 (E=6e-223) | SPla/RYanodine receptor (SPRY) domain-containing protein (469 aa)
     
 
  0.951
Bra000679
AT4G09340 (E=3e-200) | SPla/RYanodine receptor (SPRY) domain-containing protein (448 aa)
     
 
  0.951
Bra014777
AT3G55070 (E=5e-196) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- protein binding / zinc ion binding (TAIR-AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species- Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; [...] (414 aa)
     
 
  0.950
Bra007137
AT3G55070 (E=3e-195) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- protein binding / zinc ion binding (TAIR-AT4G37880.1); Has 669 Blast hits to 649 proteins in 147 species- Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 200; Plants - 87; Viruses - 0; [...] (415 aa)
     
 
  0.950
Bra007765
AT1G61150 (E=3e-019) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif, subgroup (InterPro-IPR013720), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G09300.1); Has 726 Blast hits to 694 proteins in 137 species- Archae - 0; Bacteria - 0; M [...] (74 aa)
     
 
  0.946
Bra038574
AT1G61150 (E=1e-103) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif, subgroup (InterPro-IPR013720), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594), CT11-RanBPM (InterPro-IPR013144); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G11110.1); Has 740 Blast hits to 708 proteins in 137 species- Archae - 0; Bacteria - 0; M [...] (351 aa)
     
 
  0.946
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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