STRINGSTRING
Bra006009 protein (Brassica rapa) - STRING interaction network
"Bra006009" - AT5G08580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006009AT5G08580 (E=3e-164) | calcium-binding EF hand family protein (383 aa)    
Predicted Functional Partners:
Bra038784
AT4G21150 (E=1e-139) HAP6 | HAP6 (HAPLESS 6); dolichyl-diphosphooligosaccharide-protein glycotransferase (760 aa)
       
      0.612
Bra013507
AT4G21150 (E=0.0) HAP6 | HAP6 (HAPLESS 6); dolichyl-diphosphooligosaccharide-protein glycotransferase (696 aa)
       
      0.612
Bra013564
AT4G21820 (E=1e-247) | binding / calmodulin binding (1315 aa)
     
      0.603
Bra036433
AT3G03773 (E=6e-078) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- CS domain (InterPro-IPR007052), HSP20-like chaperone (InterPro-IPR008978), CS (InterPro-IPR017447); BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT4G02450.2); Has 482 Blast hits to 482 proteins in 157 species- Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 87; Plants - 64; Viruses - 0; Other Eukaryotes - 90 (source- NCBI BLink). (150 aa)
     
      0.501
Bra033355
AT4G02450 (E=3e-038) | glycine-rich protein (230 aa)
       
      0.499
Bra024533
AT4G02450 (E=2e-017) | glycine-rich protein (180 aa)
       
      0.499
Bra000879
AT4G02450 (E=2e-047) | glycine-rich protein (210 aa)
       
      0.499
Bra023543
AT5G01150 (E=9e-159) | unknown protein (519 aa)
           
  0.477
Bra005317
AT2G30900 (E=1e-176) | unknown protein (364 aa)
           
  0.475
Bra018549
AT4G02460 (E=0.0) PMS1 | PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA binding (1123 aa)
     
      0.457
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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