STRINGSTRING
Bra006018 protein (Brassica rapa) - STRING interaction network
"Bra006018" - AT5G09310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006018AT5G09310 (E=1e-060) | unknown protein (143 aa)    
Predicted Functional Partners:
Bra033418
AT3G52640 (E=0.0) | nicastrin-related (681 aa)
       
  0.978
Bra018606
AT1G08700 (E=6e-085) | presenilin family protein ; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors (417 aa)
       
  0.972
Bra018354
AT2G29900 (E=5e-146) | presenilin family protein ; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors (392 aa)
       
  0.972
Bra022841
AT2G31440 (E=4e-101) | protein binding (251 aa)
     
  0.962
Bra009374
AT5G09270 (E=3e-045) | unknown protein (114 aa)
           
  0.529
Bra028641
AT5G09270 (E=9e-046) | unknown protein (113 aa)
           
  0.499
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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