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Bra006025 protein (Brassica rapa) - STRING interaction network
"Bra006025" - AT5G09530 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006025AT5G09530 (E=2e-016) | hydroxyproline-rich glycoprotein family protein (274 aa)    
Predicted Functional Partners:
Bra033914
AT3G22800 (E=3e-188) | leucine-rich repeat family protein / extensin family protein (461 aa)
           
  0.502
Bra023805
AT3G22800 (E=4e-187) | leucine-rich repeat family protein / extensin family protein (436 aa)
           
  0.502
Bra032653
AT1G01880 (E=2e-205) | DNA repair protein, putative (603 aa)
           
  0.455
Bra038908
AT3G51600 (E=2e-055) LTP5 | LTP5 (Lipid transfer protein 5); lipid transporter ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (115 aa)
           
  0.416
Bra036788
AT3G51600 (E=5e-058) LTP5 | LTP5 (Lipid transfer protein 5); lipid transporter ; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (116 aa)
           
  0.416
Bra029924
AT3G48900 (E=4e-251) | DNA binding / catalytic/ chromatin binding / nuclease (622 aa)
           
  0.416
Bra001950
AT3G24480 (E=2e-198) | leucine-rich repeat family protein / extensin family protein (756 aa)
           
  0.414
Bra013339
AT4G18670 (E=4e-204) | protein binding / structural constituent of cell wall (758 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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