STRINGSTRING
Bra006030 protein (Brassica rapa) - STRING interaction network
"Bra006030" - AT5G39650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006030AT5G39650 (E=2e-094) | unknown protein (189 aa)    
Predicted Functional Partners:
Bra029360
AT5G23160 (E=5e-068) | unknown protein (252 aa)
           
  0.424
Bra009332
AT5G08240 (E=6e-087) | unknown protein (261 aa)
           
  0.424
Bra007560
AT3G60780 (E=4e-099) | unknown protein (217 aa)
           
  0.424
Bra007557
AT3G60780 (E=3e-102) | unknown protein (219 aa)
           
  0.424
Bra005978
AT5G08240 (E=1e-066) | unknown protein (223 aa)
           
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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