STRINGSTRING
Bra006041 protein (Brassica rapa) - STRING interaction network
"Bra006041" - AT5G09980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006041AT5G09980 (E=1e-016) PROPEP4 | PROPEP4 (Elicitor peptide 4 precursor) (87 aa)    
Predicted Functional Partners:
Bra031224
AT2G22000 (E=3e-028) PROPEP6 | PROPEP6 (Elicitor peptide 6 precursor) (95 aa)
           
  0.541
Bra009068
AT5G09990 (E=3e-023) PROPEP5 | PROPEP5 (Elicitor peptide 5 precursor) (84 aa)
           
  0.505
Bra007222
AT3G56170 (E=3e-142) CAN | CAN (CA-2+ DEPENDENT NUCLEASE); nuclease (325 aa)
           
  0.505
Bra024336
Uncharacterized protein (90 aa)
           
  0.414
Bra035076
AT1G78920 (E=0.0) AVP2, AVPL1 | AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (802 aa)
           
  0.408
Bra008386
AT1G78920 (E=0.0) AVP2, AVPL1 | AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (803 aa)
           
  0.408
Bra018569
AT1G09280 (E=1e-296) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Rhodanese-like (InterPro-IPR001763), Protein of unknown function DUF341 (InterPro-IPR005645); BEST Arabidopsis thaliana protein match is- rhodanese-like domain-containing protein (TAIR-AT2G40760.1); Has 4342 Blast hits to 4339 proteins in 940 species- Archae - 0; Bacteria - 1695; Metazoa - 138; Fungi - 282; Plants - 108; Viruses - 0; Other Eukar [...] (586 aa)
           
  0.408
Bra004963
AT2G40410 (E=6e-157) | Ca(2+)-dependent nuclease, putative (333 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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