STRINGSTRING
Bra006059 protein (Brassica rapa) - STRING interaction network
"Bra006059" - AT5G44050 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006059AT5G44050 (E=7e-233) | MATE efflux family protein (487 aa)    
Predicted Functional Partners:
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
           
  0.563
Bra015337
AT1G04640 (E=6e-121) LIP2 | LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase (378 aa)
       
    0.549
Bra020463
AT5G57130 (E=1e-289) | protein binding (866 aa)
         
  0.543
Bra020272
AT5G59980 (E=9e-190) | RNase P subunit p30 family protein (749 aa)
     
 
    0.542
Bra002517
AT5G59980 (E=4e-155) | RNase P subunit p30 family protein (627 aa)
     
 
    0.542
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
         
  0.516
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
         
  0.516
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
     
 
  0.507
Bra017051
AT2G39800 (E=0.0) P5CS1, ATP5CS | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1); delta1-pyrroline-5-carboxylate synthetase (717 aa)
         
  0.495
Bra014732
AT3G55610 (E=0.0) P5CS2 | P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2); catalytic/ glutamate 5-kinase/ glutamate-5-semialdehyde dehydrogenase/ oxidoreductase (719 aa)
         
  0.495
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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