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Bra006079 protein (Brassica rapa) - STRING interaction network
"Bra006079" - AT5G10840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006079AT5G10840 (E=7e-194) | endomembrane protein 70, putative (656 aa)    
Predicted Functional Partners:
Bra040023
AT3G07680 (E=1e-116) | emp24/gp25L/p24 family protein (208 aa)
       
      0.482
Bra033909
AT3G22845 (E=3e-113) | emp24/gp25L/p24 protein-related (217 aa)
       
      0.482
Bra029668
AT3G07680 (E=3e-116) | emp24/gp25L/p24 family protein (208 aa)
       
      0.482
Bra023797
AT3G22845 (E=1e-105) | emp24/gp25L/p24 protein-related (218 aa)
       
      0.482
Bra001888
AT3G22845 (E=3e-107) | emp24/gp25L/p24 protein-related (219 aa)
       
      0.482
Bra001265
AT3G07680 (E=5e-111) | emp24/gp25L/p24 family protein (325 aa)
       
      0.482
Bra022226
AT3G17611 (E=1e-125) ATRBL14 | ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding (331 aa)
       
      0.461
Bra021259
AT3G17611 (E=4e-138) ATRBL14 | ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14); zinc ion binding (559 aa)
       
      0.461
Bra007456
AT3G59520 (E=6e-104) ATRBL13 | ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) (199 aa)
       
      0.461
Bra007394
AT3G58460 (E=3e-203) ATRBL15 | ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) (417 aa)
       
      0.461
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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