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Bra006085 protein (Brassica rapa) - STRING interaction network
"Bra006085" - AT5G11060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006085AT5G11060 (E=9e-176) KNAT4 | KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4); transcription activator/ transcription factor (386 aa)    
Predicted Functional Partners:
Bra025497
AT5G41410 (E=2e-224) BEL1 | BEL1 (BELL 1); DNA binding / protein binding / transcription factor (593 aa)
       
 
0.629
Bra018060
AT3G48430 (E=0.0) REF6 | REF6 (RELATIVE OF EARLY FLOWERING 6); nucleic acid binding / transcription factor/ zinc ion binding (1385 aa)
       
  0.597
Bra009474
AT5G04240 (E=0.0) ELF6 | ELF6 (EARLY FLOWERING 6); transcription factor (1160 aa)
       
  0.597
Bra022350
AT3G18730 (E=0.0) TSK, MGO3, BRU1 | TSK (TONSOKU); protein binding (1324 aa)
       
  0.538
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
       
  0.529
Bra040948
AT5G01840 (E=1e-025) ATOFP1, OFP1 | OFP1 (OVATE FAMILY PROTEIN 1); protein binding / transcription repressor (263 aa)
       
 
  0.525
Bra013150
AT2G12550 (E=2e-225) | ubiquitin-associated (UBA)/TS-N domain-containing protein (553 aa)
       
      0.520
Bra031546
AT1G06920 (E=3e-095) ATOFP4, OFP4 | OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) (301 aa)
       
 
  0.515
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
           
  0.487
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
           
  0.487
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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