STRINGSTRING
Bra006097 protein (Brassica rapa) - STRING interaction network
"Bra006097" - AT5G11470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006097AT5G11470 (E=2e-079) | DNA binding / nucleic acid binding (677 aa)    
Predicted Functional Partners:
Bra029664
AT3G07610 (E=1e-213) IBM1 | IBM1 (increase in bonsai methylation 1); histone demethylase(H3-K9 specific) / transcription factor (1080 aa)
           
  0.541
Bra029405
AT1G58602 (E=2e-283) | ATP binding / protein binding (1162 aa)
           
  0.487
Bra027834
AT1G59218 (E=3e-287) | disease resistance protein (CC-NBS-LRR class), putative (983 aa)
           
  0.487
Bra039440
AT3G05410 (E=1e-089) | calcium ion binding (181 aa)
           
  0.478
Bra035572
AT5G55390 (E=0.0) EDM2 | EDM2; transcription factor (1597 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]