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Bra006103 protein (Brassica rapa) - STRING interaction network
"Bra006103" - AT5G11520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006103AT5G11520 (E=1e-238) ASP3, YLS4 | ASP3 (ASPARTATE AMINOTRANSFERASE 3); L-aspartate-2-oxoglutarate aminotransferase (452 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
         
  0.957
Bra030951
AT1G53240 (E=2e-177) | malate dehydrogenase (NAD), mitochondrial (341 aa)
     
  0.956
Bra030204
AT2G22780 (E=1e-187) PMDH1 | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (353 aa)
     
  0.956
Bra028624
AT5G09660 (E=3e-192) PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase (358 aa)
     
  0.956
Bra018137
AT3G47520 (E=3e-187) MDH | MDH (MALATE DEHYDROGENASE); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (402 aa)
     
  0.956
Bra009397
AT5G09660 (E=1e-188) PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase (358 aa)
     
  0.956
Bra027485
AT1G04410 (E=2e-178) | malate dehydrogenase, cytosolic, putative (332 aa)
     
  0.954
Bra020374
AT5G58330 (E=6e-225) | malate dehydrogenase (NADP), chloroplast, putative (443 aa)
     
  0.954
Bra006772
AT5G58330 (E=4e-235) | malate dehydrogenase (NADP), chloroplast, putative (444 aa)
     
  0.954
Bra002660
AT5G58330 (E=2e-242) | malate dehydrogenase (NADP), chloroplast, putative (442 aa)
     
  0.954
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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