STRINGSTRING
Bra006104 protein (Brassica rapa) - STRING interaction network
"Bra006104" - AT5G11530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006104AT5G11530 (E=5e-178) EMF1 | EMF1 (embryonic flower 1); transcription regulator (995 aa)    
Predicted Functional Partners:
Bra002667
AT5G58230 (E=6e-225) MSI1, MEE70, ATMSI1 | MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding (426 aa)
       
 
  0.759
Bra031921
AT5G64360 (E=1e-059) | DNAJ heat shock N-terminal domain-containing protein (369 aa)
       
 
  0.590
Bra024289
AT5G64360 (E=3e-164) | DNAJ heat shock N-terminal domain-containing protein (459 aa)
       
 
  0.590
Bra022541
AT5G51230 (E=2e-272) EMF2, VEF2, CYR1 | EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor (632 aa)
     
   
  0.555
Bra015200
AT5G51230 (E=4e-290) EMF2, VEF2, CYR1 | EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor (632 aa)
     
   
  0.555
Bra023629
AT5G17690 (E=3e-056) TFL2, LHP1 | TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding (375 aa)
           
  0.483
Bra006417
AT5G17690 (E=6e-021) TFL2, LHP1 | TFL2 (TERMINAL FLOWER 2); DNA binding / methylated histone residue binding (324 aa)
           
  0.483
Bra023933
AT3G20740 (E=3e-209) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (369 aa)
     
   
  0.405
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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