STRINGSTRING
Bra006109 protein (Brassica rapa) - STRING interaction network
"Bra006109" - AT2G37410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006109AT2G37410 (E=6e-042) ATTIM17-2, TIM17 | ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (130 aa)    
Predicted Functional Partners:
Bra025966
AT1G17530 (E=4e-056) ATTIM23-1 | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter (184 aa)
     
  0.971
Bra016597
AT1G17530 (E=1e-047) ATTIM23-1 | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter (185 aa)
     
  0.971
Bra016036
AT1G72750 (E=1e-059) ATTIM23-2 | ATTIM23-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (191 aa)
     
  0.971
Bra008046
AT1G72750 (E=3e-072) ATTIM23-2 | ATTIM23-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (188 aa)
     
  0.971
Bra038026
AT1G55900 (E=1e-016) TIM50, emb1860 | TIM50 (160 aa)
     
  0.884
Bra037095
AT1G55900 (E=2e-122) TIM50, emb1860 | TIM50 (355 aa)
     
  0.884
Bra030827
AT1G55900 (E=2e-145) TIM50, emb1860 | TIM50 (372 aa)
     
  0.884
Bra036674
AT2G36070 (E=1e-099) ATTIM44-2 | ATTIM44-2; protein-transmembrane transporting ATPase (413 aa)
     
  0.878
Bra036478
AT2G36070 (E=2e-173) ATTIM44-2 | ATTIM44-2; protein-transmembrane transporting ATPase (462 aa)
     
  0.878
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
       
  0.857
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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