STRINGSTRING
Bra006112 protein (Brassica rapa) - STRING interaction network
"Bra006112" - AT1G05890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006112AT1G05890 (E=6e-198) | zinc finger protein-related (534 aa)    
Predicted Functional Partners:
Bra015086
AT3G24800 (E=2e-094) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (378 aa)
         
  0.923
Bra013241
AT3G24800 (E=4e-105) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (390 aa)
         
  0.923
Bra028876
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1967 aa)
     
 
  0.890
Bra009598
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1985 aa)
     
 
  0.890
Bra005717
AT5G02310 (E=0.0) PRT6 | PRT6 (PROTEOLYSIS 6); ubiquitin-protein ligase (1849 aa)
     
 
  0.890
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
     
  0.789
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
         
  0.780
Bra029252
AT5G62540 (E=2e-082) UBC3 | UBC3 (ubiquitin-conjugating enzyme 3); ubiquitin-protein ligase (150 aa)
       
  0.680
Bra026833
AT1G14400 (E=5e-088) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase (152 aa)
       
  0.680
Bra024808
AT2G02760 (E=2e-079) ATUBC2, UBC2 | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (152 aa)
       
  0.680
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]