STRINGSTRING
Bra006118 protein (Brassica rapa) - STRING interaction network
"Bra006118" - AT5G11790 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006118AT5G11790 (E=1e-184) | Ndr family protein (344 aa)    
Predicted Functional Partners:
Bra034628
AT4G34460 (E=6e-191) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (378 aa)
       
 
  0.751
Bra011536
AT4G34460 (E=6e-207) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (377 aa)
       
 
  0.751
Bra012994
AT5G60940 (E=5e-171) | transducin family protein / WD-40 repeat family protein (447 aa)
       
      0.602
Bra017658
AT4G34460 (E=1e-193) AGB1, ELK4, ATAGB1 | AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein binding (378 aa)
       
 
  0.533
Bra017802
AT4G36960 (E=6e-171) | RNA recognition motif (RRM)-containing protein (408 aa)
       
      0.504
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
           
  0.504
Bra030671
AT1G07120 (E=3e-183) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT4G18570.1); Has 197 Blast hits to 171 proteins in 40 species- Archae - 0; Bacteria - 8; Metazoa - 25; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 75 (source- NCBI BLink). (391 aa)
           
  0.489
Bra033310
AT2G41610 (E=3e-129) | unknown protein (313 aa)
           
  0.406
Bra017333
AT3G26125 (E=3e-282) CYP86C2 | CYP86C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (536 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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