STRINGSTRING
Bra006121 protein (Brassica rapa) - STRING interaction network
"Bra006121" - AT5G11840 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006121AT5G11840 (E=9e-105) | unknown protein (274 aa)    
Predicted Functional Partners:
Bra040977
ATCG00680 (E=3e-225) PSBB | encodes for CP47, subunit of the photosystem II reaction center. ; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (486 aa)
   
          0.507
Bra013650
AT4G22830 (E=7e-080) | unknown protein (187 aa)
   
          0.507
Bra007446
AT3G59400 (E=3e-085) GUN4 | GUN4; enzyme binding / tetrapyrrole binding (256 aa)
   
        0.491
Bra003375
AT3G59400 (E=8e-082) GUN4 | GUN4; enzyme binding / tetrapyrrole binding (259 aa)
   
        0.489
Bra028658
AT5G08400 (E=4e-133) | unknown protein (300 aa)
   
          0.487
Bra041122
ATCG00350 (E=6e-307) PSAA | Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. (546 aa)
   
          0.486
Bra005991
AT5G08400 (E=1e-138) | unknown protein (331 aa)
   
          0.486
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
   
          0.483
Bra006777
AT5G58260 (E=3e-103) | Encodes subunit NDH-N of NAD(P)H-plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. (208 aa)
   
        0.480
Bra011105
AT4G29400 (E=4e-132) | unknown protein (296 aa)
   
          0.479
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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