STRINGSTRING
Bra006123 protein (Brassica rapa) - STRING interaction network
"Bra006123" - AT5G11860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006123AT5G11860 (E=2e-143) | NLI interacting factor (NIF) family protein (314 aa)    
Predicted Functional Partners:
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
     
  0.956
Bra034073
AT3G09560 (E=5e-232) | lipin family protein (857 aa)
     
  0.870
Bra033646
AT5G42870 (E=2e-210) | lipin family protein (837 aa)
     
  0.870
Bra029774
AT3G09560 (E=1e-242) | lipin family protein (813 aa)
     
  0.870
Bra027461
AT5G42870 (E=6e-230) | lipin family protein (823 aa)
     
  0.870
Bra022399
AT3G09560 (E=5e-092) | lipin family protein (216 aa)
     
  0.870
Bra011968
AT3G09560 (E=4e-030) | lipin family protein (192 aa)
     
  0.870
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
     
  0.868
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
     
  0.868
Bra011638
AT4G35800 (E=0.0) NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2709 aa)
       
  0.760
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]